Hi Guys, thanks to everyone that offered suggestions yesterday. We have the iGyro setup and working properly now, The main problems was how I as doing the teach function. Basically I was immediately releasing the stick input back to center after selecting next and it appears the Atom is slow enough updating everything that it ended up setting the stick center as max input which of course completely prevented the gyro from doing anything which is why if did nothing after completing setup. This time we held full stick input, selected next and never let the stick go back to center, waited for the screen to update and then applied the next full stick input. After that everything worked properly.. I watched a Martin Pickering iGyro setup video yesterday and noticed he never let the stick go back to centered, just held full stick inputs so I duplicated his behavior during teach and that resolved the issue.
Thanks again to everyone that offered to help.