RE: mounting a different engine
Assuming that you will be able to install new blind nuts after I'd go with bigtim's idea. Yes the dowel is important to save strength in the engine bearers. Open the existing hole up so the dowel will just squeeze in when tapped with a hammer and apply wood glue to the dowel and the hole. Dowel needs to go full depth of the hole. Obviously knock out the old blinds nut first.