Where are your servos plugged into the rx? Sounds like one or more may be in the wrong slot. Left to right, on the AR6000, it should be:

BAT - nothing, unless you use an external BEC
THR - ESC lead - was ch 3 in Esky rx
AILE - Aileron servo - was ch 1 in Esky rx
ELE - Elevator servo - was ch 2 in Esky rx
RUD - Gyro lead - was ch 4 in Esky rx
GER - Gyro remote gain lead - was ch 5 in Esky rx, if used
AUX - Pitch servo - was ch 6 in Esky rx